miRBase entry: ppe-MIR399n

Stem-loop ppe-MIR399n


Accession
MI0026134
Description
Prunus persica ppe-MIR399n precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention ppe-MIR399n
(5 sentences)

Sequence

cagggcaaagucuccucuggcauguggccacuuacaauuauaaaugcuuccggcugggccucagugagcaaagccuugcauuauucuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.((((..((((.(((....((((..(((.....).))..))))..)))))))..)))))))).))).))))))).)))))))))))))..

Structure
ca       g      c       u   -    u    uu    a   uucc    gg  - u 
  gggcaaa ucuccu uggcaug ggc cacu acaa  auaa ugc    ggcu  gc c c
  ||||||| |||||| ||||||| ||| |||| ||||  |||| |||    ||||  || | a
  CUCGUUU AGAGGA ACCGUau ucg guga uguu  uauu acg    ccga  cg g g
GG       -      A       u   u    -    cu    -   --uu    aa  a u 


Annotation confidence Not enough data
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Genome context
chrG3: 5253496-5253617 [-]

Database links

Mature ppe-miR399n

Accession MIMAT0031510
Description Prunus persica ppe-miR399n mature miRNA
Sequence 102 - UGCCAAAGGAGAUUUGCUCGG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149