Stem-loop ppe-MIR399m

Accession

MI0026133

Description

Prunus persica ppe-MIR399m precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ppe-MIR399m
(5 sentences)

Sequence

cagggcaaagucuccucuggcauguggccacuuauaauuauaaaugcuucgggcugagccucagugagcaaacccuugcauuauucuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.((((..((((.(((...(((.(..(((.....).))..))))..)))))))..)))))))).))).))))))).)))))))))))))..

Structure

ca       g      c       u   -    u    uu    a   uuc   c ga  - u 
  gggcaaa ucuccu uggcaug ggc cacu auaa  auaa ugc   ggg u  gc c c
  ||||||| |||||| ||||||| ||| |||| ||||  |||| |||   ||| |  || | a
  CUCGUUU AGAGGA ACCGUau ucg guga uguu  uauu acg   ccc a  cg g g
GG       -      A       u   u    -    cu    -   -uu   - aa  a u 

Annotation confidence Not enough data

Genome context

chrG4: 3193035-3193156 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR399m

Mature ppe-miR399m

• Accession: MIMAT0031509
• Description: Prunus persica ppe-miR399m mature miRNA
• Sequence: 102 - UGCCAAAGGAGAUUUGCUCGG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149