Stem-loop ppe-MIR397

Accession

MI0026120

Description

Prunus persica ppe-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

4 open access papers mention ppe-MIR397
(7 sentences)

Sequence

aaggguggcucaaaaucaaucaugcagaugcagauuaugagagcaguggagguuccagauugaagaaacaUCAUUGAGUGCAGCGUUGAUGaauugaaauucuuucgaaauuucaucagcgcugcacccaauuauguuucuauccaauuuuggcaaaguacuggcuggcuucucuggucuucuucuuucuuuuagcccuuuu
(((((.((((.((((..((((.(((....)))))))..((((.(((.((((((((((((((..((((((((.((((.((((((((((((((((((((((...))))))...)))))))))))))))).)))).))))))))..(((....)))...))).))))..)))))))))).))))........)))))))))))))

Structure

     u    c    ucaaucaugcagaugcagauuau    g   u       --    -   -------------ga        C    A                ---      u 
aaggg ggcu aaaa                       gaga cag ggagguu  ccag auu               agaaacaU AUUG GUGCAGCGUUGAUGaa   uugaaa  
||||| |||| ||||                       |||| ||| |||||||  |||| |||               |||||||| |||| ||||||||||||||||   |||||| u
uuuuc ccga uuuu                       uucu guc ucuucgg  gguc uga               ucuuugua uaac cacgucgcgacuacuu   agcuuu  
     -    -    ---------------cuuucuuc    g   -       uc    a   aacgguuuuaaccua        u    c                uaa      c 

Annotation confidence Not enough data

Genome context

chrG4: 1619282-1619483 [+]

Mature ppe-miR397

• Accession: MIMAT0031496
• Description: Prunus persica ppe-miR397 mature miRNA
• Sequence: 71 - UCAUUGAGUGCAGCGUUGAUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149