miRBase entry: ppe-MIR396a

Stem-loop ppe-MIR396a


Accession
MI0026118
Description
Prunus persica ppe-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
6 open access papers mention ppe-MIR396a
(15 sentences)

Sequence

UUCCACAGCUUUCUUGAACGUcugugcccuuucaggaacuaucagauaauuuucaugcaguuccaauagcacaaaaacaguucaagaaagcugugaaa
...((((((((((((((((((.(((((.......((((((..((((......)).)).))))))....)))))...)).))))))))))))))))...

Structure
UUC                -  --c     ccuuuca      au  -  ua 
   CACAGCUUUCUUGAAC GU   ugugc       ggaacu  ca ga  a
   |||||||||||||||| ||   |||||       ||||||  || ||   
   gugucgaaagaacuug ca   acacg       ccuuga  gu cu  u
aaa                a  aaa     ---auaa      -c  a  uu 


Annotation confidence Not enough data
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Genome context
chrG1: 40254306-40254403 [-]

Database links

Mature ppe-miR396a

Accession MIMAT0031494
Description Prunus persica ppe-miR396a mature miRNA
Sequence 1 - UUCCACAGCUUUCUUGAACGU - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149