miRBase entry: ppe-MIR395m

Stem-loop ppe-MIR395m


Accession
MI0026115
Description
Prunus persica ppe-MIR395m precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention ppe-MIR395m
(13 sentences)

Sequence

gucaguuguccccuagaguuucccugaccacuucacugggaucaagcuuuccaaaacccuucaacugagggugaaauuccaugcaugccaucccaCUGAAGUGUUUGGGGGAACUCugguugccaccugac
(((((.((.(..(((((((((((((((.(((((((.((((((((.((........((((((.....))))))..........)).))..)))))).))))))).)))))))))))))))..).)).)))))

Structure
     u  u cc               c       c      --  a  --uuuccaaa      c 
gucag ug c  cuagaguuucccuga cacuuca ugggau  ca gc          acccuu a
||||| || |  ||||||||||||||| ||||||| ||||||  || ||          |||||| a
caguc ac g  gguCUCAAGGGGGUU GUGAAGU acccua  gu cg          ugggag c
     c  c uu               U       C      cc  a  uaccuuaaag      u 


Annotation confidence Not enough data
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Genome context
chrG1: 27720832-27720962 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR395m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR395m

Accession MIMAT0031491
Description Prunus persica ppe-miR395m mature miRNA
Sequence 96 - CUGAAGUGUUUGGGGGAACUC - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149