miRBase entry: ppe-MIR395b

Stem-loop ppe-MIR395b


Accession
MI0026104
Description
Prunus persica ppe-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention ppe-MIR395b
(13 sentences)

Sequence

aucagauagccccuagaGUUCCCUCAAACACUUCAUUggagauuauuaugggcauuaucuuaauuaugccucucucucucuacuuucuaCUGAAGUGUUUGGGGGGACCCuuggagucauuugau
(((((((.((.((.((.((((((((((((((((((.((((((.......((((((..........))))))............)))))).)))))))))))))))))).)).)).)).)))))))

Structure
       a  c  u  a                  U      -----uuauuau      uauc 
aucagau gc cc ag GUUCCCUCAAACACUUCA Uggaga            gggcau    u
||||||| || || || |||||||||||||||||| ||||||            ||||||     
uaguuua ug gg uC CAGGGGGGUUUGUGAAGU aucuuu            uccgua    u
       c  a  u  C                  C      caucucucucuc      uuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrG1: 27773971-27774095 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ppe-MIR395b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR395b-5p

Accession MIMAT0031479
Description Prunus persica ppe-miR395b-5p mature miRNA
Sequence 18 - GUUCCCUCAAACACUUCAUU - 37
Evidence experimental
Illumina [1]

Mature ppe-miR395b-3p

Accession MIMAT0031480
Description Prunus persica ppe-miR395b-3p mature miRNA
Sequence 90 - CUGAAGUGUUUGGGGGGACCC - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149