miRBase entry: ppe-MIR393b

Stem-loop ppe-MIR393b


Accession
MI0026101
Description
Prunus persica ppe-MIR393b precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
8 open access papers mention ppe-MIR393b
(22 sentences)

Sequence

gguggaggcuUCCAAAGGGAUCGCAUUGAUCuaauuaaccaaaucaacauggugaguguagauauuugauauuggaucgaugcgaucccuugggaaguuucuauc
(((((((((((((.(((((((((((((((((((((.......(((.((((.....)))).))).......))))))))))))))))))))).)))))))))))))

Structure
             A                     uaaccaa   a    g 
gguggaggcuUCC AAGGGAUCGCAUUGAUCuaau       auc acau g
||||||||||||| |||||||||||||||||||||       ||| |||| u
cuaucuuugaagg uucccuagcguagcuagguua       uag ugug g
             g                     uaguuua   a    a 


Annotation confidence Not enough data
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Genome context
chrG2: 28654018-28654122 [-]

Database links

Mature ppe-miR393b

Accession MIMAT0031475
Description Prunus persica ppe-miR393b mature miRNA
Sequence 11 - UCCAAAGGGAUCGCAUUGAUC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149