miRBase entry: ppe-MIR171d

Stem-loop ppe-MIR171d


Accession
MI0026094
Description
Prunus persica ppe-MIR171d precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
6 open access papers mention ppe-MIR171d
(18 sentences)

Sequence

caaguagacauggUGUGAUAUUGGUUCGGUUCAUAucuuuuauacuuuuuggauauauccauccauccauucauccauccauccauccaucacacuucacgaaucacaaacaaagaugaCGAGCCGAAUCAAUAUCACUCuuguaugcuug
((((((.(((.((.((((((((((((((((((.(((((((.........(((((......)))))...((((............................)))).......)))))))..)))))))))))))))))).))))).))))))

Structure
      g   u  U                  -A       -------------------------------------uauacuuuu     au 
caagua aca gg GUGAUAUUGGUUCGGUUC  UAucuuu                                              uggau  a
|||||| ||| || ||||||||||||||||||  |||||||                                              |||||   
guucgu ugu uC CACUAUAACUAAGCCGAG  guagaaa                                              accua  u
      a   -  U                  Ca       caaacacuaagcacuucacacuaccuaccuaccuaccuacuuaccu     cc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrG2: 29621754-29621904 [-]

Database links

Mature ppe-miR171d-5p

Accession MIMAT0031466
Description Prunus persica ppe-miR171d-5p mature miRNA
Sequence 14 - UGUGAUAUUGGUUCGGUUCAUA - 35
Evidence experimental
Illumina [1]

Mature ppe-miR171d-3p

Accession MIMAT0031467
Description Prunus persica ppe-miR171d-3p mature miRNA
Sequence 120 - CGAGCCGAAUCAAUAUCACUC - 140
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149