Stem-loop ppe-MIR169k

Accession

MI0026092

Description

Prunus persica ppe-MIR169k precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

7 open access papers mention ppe-MIR169k
(20 sentences)

Sequence

caaagcauugcauggaaaagaauagagucuaacuGAGCCAAGGAUGAAUUGCCGGcauuguauauuaccccucaaaaugcaaucuauauuugucgaccggcaauuuguucuuggcuauguugggcucucuucguuccaugcaaugccaug
....(((((((((((((..(((.((((((((((..((((((((((((((((((((((((((((.............)))))))...........).))))))))))))))))))))..)))))))))).))).)))))))))))))....

Structure

caaa             aa   u          uG                    - -----------       auuac 
    gcauugcauggaa  gaa agagucuaac  AGCCAAGGAUGAAUUGCCGG c           auuguau     c
    |||||||||||||  ||| ||||||||||  |||||||||||||||||||| |           |||||||     c
    cguaacguaccuu  cuu ucucggguug  ucgguucuuguuuaacggcc g           uaacgua     c
guac             -g   c          ua                    a cuguuuauauc       aaacu 

Annotation confidence Not enough data

Genome context

chrG1: 5660948-5661097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR169k

Mature ppe-miR169k

• Accession: MIMAT0031464
• Description: Prunus persica ppe-miR169k mature miRNA
• Sequence: 35 - GAGCCAAGGAUGAAUUGCCGG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149