miRBase entry: ppe-MIR169h

Stem-loop ppe-MIR169h


Accession
MI0026089
Description
Prunus persica ppe-MIR169h precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
7 open access papers mention ppe-MIR169h
(20 sentences)

Sequence

ggaagagaugucaaacaugaaaaaaggagcuuaguuuggUAGCCAAGGAUGACUUGCCUGCagccuucuaaagaggguaaucaaucaaaaucugaaaaccccuaguuugguccucaggcaagcaccuuggcuaacucgacaaguucuuuuauuucaugcuagacucucucuucc
((((((((.(((...(((((((((((((((((.(((.(((((((((((.((.((((((((..(((......((.((((..(((.........)))..)))))).....)))...)))))))))))))))))).))).))))))))))))).)))))))...)))..))))))))

Structure
        -u   aaa       -          a   u   -        A  A        -Ca   uucuaa  a    aa   auc 
ggaagaga  guc   caugaaa aaaggagcuu guu ggU AGCCAAGG UG CUUGCCUG   gcc      ag gggu  uca   a
||||||||  |||   ||||||| |||||||||| ||| ||| |||||||| || ||||||||   |||      || ||||  |||   a
ccuucucu  cag   guacuuu uuuucuugaa cag uca ucgguucc ac gaacggac   ugg      uc ccca  agu   a
        cu   auc       a          -   c   a        -  -        ucc   -uuuga  -    aa   cua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrG4: 10148140-10148313 [+]

Database links

Mature ppe-miR169h

Accession MIMAT0031461
Description Prunus persica ppe-miR169h mature miRNA
Sequence 40 - UAGCCAAGGAUGACUUGCCUGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149