Stem-loop ppe-MIR169f

Accession

MI0026087

Description

Prunus persica ppe-MIR169f precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

7 open access papers mention ppe-MIR169f
(20 sentences)

Sequence

gagaggaagggaggucuaacaugagagcaagagccuaguuuggUAGCCAAGGAUGACUUGCCUGCucuaccagagagaucaauucuccauugguguaacuuuguuggauuggaagcuucuguuuggccaggcagucauccaggcuaaacugacaggcucuucuuccucaugccaggccuucccuucuucc
..(((((((((((((((..((((((((.((((((((.(((...(((((..((((((((.(((((.....(((((.((((((((((..((..(......)..))..))))))).....))).))))).))))))))))))).)))))....)))))))))))))..))))))..))))).)))))))))).

Structure

ga          -     aa      --  c        a   -ugg     AA        U     Cucua     g   -----       uc  uu gu 
  gaggaaggga ggucu  caugag  ag aagagccu guu    UAGCC  GGAUGACU GCCUG     ccaga aga     ucaauuc  ca  g  g
  |||||||||| |||||  ||||||  || |||||||| |||    |||||  |||||||| |||||     ||||| |||     |||||||  ||  |   
  cuucuucccu ccgga  guacuc  uc uucucgga cag    aucgg  ccuacuga cggac     gguuu ucu     gguuagg  gu  c  u
-c          u     cc      cu  -        -   ucaa     -a        -     ----c     g   ucgaa       uu  uu aa 

Annotation confidence Not enough data

Genome context

chrG2: 27422071-27422260 [-]

Mature ppe-miR169f

• Accession: MIMAT0031459
• Description: Prunus persica ppe-miR169f mature miRNA
• Sequence: 44 - UAGCCAAGGAUGACUUGCCUGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149