miRBase entry: ppe-MIR169b

Stem-loop ppe-MIR169b


Accession
MI0026084
Description
Prunus persica ppe-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
7 open access papers mention ppe-MIR169b
(20 sentences)

Sequence

agucucagaguguuuacaugaagcacuagagauuggauugCAGCCAAGGAUGACUUGCCGGcauuuacaguacucuugcuuuaugcagcugagguuugccggcaaguugucuuuggcuacauuuugcucucuucuucucaugucagccucugagacu
((((((((((.(((.((((((......(((((.((((.((.((((((((((((((((((((((....((((.....(((.....))))))).....)))))))))))))))))))))).)).)))).))))).....)))))).)))))))))))))

Structure
          u   u      agcacu     u    u  C                      -uuua    acucu   u 
agucucagag guu acauga      agaga ugga ug AGCCAAGGAUGACUUGCCGGca     cagu     ugc u
|||||||||| ||| ||||||      ||||| |||| || ||||||||||||||||||||||     ||||     ||| u
ucagagucuc cga uguacu      ucucu guuu ac ucgguuucuguugaacggccgu     gucg     acg a
          -   c      -cuucu     c    u  a                      uugga    -----   u 


Annotation confidence Not enough data
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Genome context
chrG1: 5647462-5647618 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppe-MIR169b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR169b

Accession MIMAT0031456
Description Prunus persica ppe-miR169b mature miRNA
Sequence 41 - CAGCCAAGGAUGACUUGCCGG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149