miRBase entry: ppe-MIR156h

Stem-loop ppe-MIR156h


Accession
MI0026063
Description
Prunus persica ppe-MIR156h precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
14 open access papers mention ppe-MIR156h
(60 sentences)

Sequence

agguuuugUUGACAGAAGAUAGAGAGCACagaugaagaaaugcauggacaucgacauggcaggcagcaucucucuccuuugugcucucuaugcuucugucaucacaccu
((((..((.(((((((((((((((((((((((.(((((.((((.((..(((....))).....)))))).))).)).)))))))))))))).))))))))).)).))))

Structure
    uu  U         -              u  -   a    a  ---ga   c 
aggu  ug UGACAGAAG AUAGAGAGCACaga ga aga augc ug     cau g
||||  || ||||||||| |||||||||||||| || ||| |||| ||     |||  
ucca  ac acugucuuc uaucucucguguuu cu ucu uacg ac     gua a
    -c  u         g              c  c   c    -  ggacg   c 


Annotation confidence Not enough data
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Genome context
chrG3: 16336810-16336918 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR156h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR156h

Accession MIMAT0031435
Description Prunus persica ppe-miR156h mature miRNA
Sequence 9 - UUGACAGAAGAUAGAGAGCAC - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149