miRBase entry: ppe-MIR156f

Stem-loop ppe-MIR156f


Accession
MI0026061
Description
Prunus persica ppe-MIR156f precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
14 open access papers mention ppe-MIR156f
(60 sentences)

Sequence

agcuaguagaggaggcauaggugauuuugcUGACAGAAGAUAGAGAGCACagauggugaaaugcaugaacaaggcagcaucucaauccuuugugcucucuaugcuucugucaucaccuucauccccuuaccuccccuauuugcu
(((.(((((.(((((....(((((...((.(((((((((((((((((((((((.(((((.((((.((.......)))))).)))..)))))))))))))))).))))))))).))...)))))......))))).))))).)))

Structure
   u     a     --caua     uuu  c         -              u  --   a    a  aa 
agc aguag ggagg      gguga   ug UGACAGAAG AUAGAGAGCACaga gg  uga augc ug  c
||| ||||| |||||      |||||   || ||||||||| |||||||||||||| ||  ||| |||| ||  a
ucg uuauc ccucc      cuacu   ac acugucuuc uaucucucguguuu cc  acu uacg ac  a
   u     c     auuccc     ucc  u         g              -  ua   c    -  gg 


Annotation confidence Not enough data
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Genome context
chrG3: 16336244-16336387 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR156f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR156f

Accession MIMAT0031433
Description Prunus persica ppe-miR156f mature miRNA
Sequence 31 - UGACAGAAGAUAGAGAGCAC - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149