Stem-loop sequence mmu-mir-142b

Accession

MI0026028 (change log)

Symbol

MGI:Mir142b

Description

Mus musculus miR-142b stem-loop

Gene family

MIPF0000084; mir-142

Literature search

166 open access papers mention mmu-mir-142b
(1909 sentences)

Stem-loop

   gc    u ucc  agccc        c                  a      acccucc 
5'   gugg c   ga     acagugca ucauccauaaaguaggaa cacuac       a
     |||| |   ||     |||||||| |||||||||||||||||| ||||||       g
3'   cacc g   cu     ugucacgu aguggguauuucaucuuu gugaug       u
   --    u --u  --guc        c                  c      auugucg 

Deep sequencing

789 reads, 6.17 reads per million, 81 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 87756841-87756955 [-]
• Overlapping transcripts:

  antisense

  OTTMUST00000002656 ; RP23-449P23.3-001; intron 1

  ENSMUST00000123700 ; A430104N18Rik-001; intron 1

Clustered miRNAs

< 10kb from mmu-mir-142b

• mmu-mir-142a: chr11: 87756864-87756927 [+]
• mmu-mir-142b: chr11: 87756841-87756955 [-]

Database links

• MGI:Mir142b
• miRBase Tracker:MI0026028

Mature sequence mmu-miR-142b

• Accession: MIMAT0031402
• Sequence: 31 - uccauaaaguaggaaacacu - 50
• Deep sequencing: 309 reads, 61 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-142b
  • miRDB:mmu-miR-142b

References

1. PMID:23185045 "Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2" Polikepahad S, Corry DB Nucleic Acids Res. 41:1164-1177(2013).