miRBase entry: osa-MIR5539b

Stem-loop osa-MIR5539b


Accession
MI0026008
Description
Oryza sativa osa-MIR5539b precursor miRNA
Gene family
MIPF0001733; MIR5539


Sequence

6 reads, 6 reads per million, 2 experiments
gauucaaagcAAGAAAACGGAUGCGCGUGCUAacgcuuucgcgcuagugcgcucaauccguugcuuguuuggaaca
..(((.(((((((..((((((((.((((((((.(((....))).)))))))).).))))))).))))))).)))..

Structure
ga   a       AA       - C        a   u 
  uuc aagcAAG  AACGGAU G GCGUGCUA cgc u
  ||| |||||||  ||||||| | |||||||| |||  
  aag uuuguuc  uugccua c cgcgugau gcg u
ac   g       -g       a u        c   c 


Annotation confidence Not enough data
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Genome context
Chr12: 20553788-20553863 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5539b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5539b

Accession MIMAT0031377
Description Oryza sativa osa-miR5539b mature miRNA
Sequence 11 - AAGAAAACGGAUGCGCGUGCUA - 32
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53