Stem-loop sequence stu-MIR169f

Accession

MI0026002 (change log)

Description

Solanum tuberosum miR169f stem-loop

Literature search

4 open access papers mention stu-MIR169f
(6 sentences)

Stem-loop

   --ua          a      u     -----       uu          aauua 
5'     gccaaggaug cuugcc uucau     caaugcc  guaaaaagga     a
       |||||||||| |||||| |||||     |||||||  ||||||||||      
3'     cgguuccuac gaacgg gagua     guuaugg  uauuuuuccu     u
   ucag          -      u     aaagg       --          aaaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138318.1: 169894-169997 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026002

Mature sequence stu-miR169f-5p

• Accession: MIMAT0031369
• Sequence: 1 - uagccaaggaugacuugccu - 20
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR169f-3p

• Accession: MIMAT0031370
• Sequence: 86 - gcaagcauccuuggcgacu - 104
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).