miRBase entry: stu-MIR169f

Stem-loop stu-MIR169f


Accession
MI0026002
Description
Solanum tuberosum stu-MIR169f precursor miRNA

Literature search
4 open access papers mention stu-MIR169f
(6 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUuucaucaaugccuuguaaaaaggaaauuaauuaaaauccuuuuuaugguauugggaaaaugagugGCAAGCAUCCUUGGCGACU
..((((((((((.((((((.((((((((((((..((((((((((............))))))))))))))))).....))))).))))))))))))))))....

Structure
--UA          A      U     -----       uu          aauua 
    GCCAAGGAUG CUUGCC uucau     caaugcc  guaaaaagga     a
    |||||||||| |||||| |||||     |||||||  ||||||||||      
    CGGUUCCUAC GAACGg gagua     guuaugg  uauuuuuccu     u
UCAG          -      u     aaagg       --          aaaau 


Annotation confidence Not enough data
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Genome context
JH138318.1: 169894-169997 [-]

Database links

Mature stu-miR169f-5p

Accession MIMAT0031369
Description Solanum tuberosum stu-miR169f-5p mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCU - 20
Evidence experimental
Illumina [1]

Mature stu-miR169f-3p

Accession MIMAT0031370
Description Solanum tuberosum stu-miR169f-3p mature miRNA
Sequence 86 - GCAAGCAUCCUUGGCGACU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233