Stem-loop sequence stu-MIR156j

Accession

MI0025995 (change log)

Description

Solanum tuberosum miR156j stem-loop

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156j
(22 sentences)

Stem-loop

   --       -    -                guu   u       ugu 
5'   ugacaga agag agugagcacacauggu   uuc ggcauga   u
     ||||||| |||| ||||||||||||||||   ||| |||||||   u
3'   acugucu ucuc ucacucguguguauca   aag ucguauu   a
   cc       a    g                ---   u       uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137923.1: 550610-550701 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025995

Mature sequence stu-miR156j-5p

• Accession: MIMAT0031355
• Sequence: 1 - ugacagaagagagugagcac - 20
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR156j-3p

• Accession: MIMAT0031356
• Sequence: 71 - gcucacugcucuaucugucacc - 92
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).