Stem-loop sequence stu-MIR156h

Accession

MI0025993 (change log)

Description

Solanum tuberosum miR156h stem-loop

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention stu-MIR156h
(22 sentences)

Stem-loop

   --       -    -         a      gua          au 
5'   ugacaga agag agugagcac cauggu   uucaagcaug  g
     ||||||| |||| ||||||||| ||||||   ||||||||||  u
3'   acugucu ucuc ucacucgug guaucg   aaguucguac  u
   cc       a    g         c      ---          au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137923.1: 518360-518447 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR156h

• stu-MIR156h: JH137923.1: 518360-518447 [+]
• stu-MIR156i: JH137923.1: 518632-518719 [+]

Database links

• miRBase Tracker:MI0025993

Mature sequence stu-miR156h-5p

• Accession: MIMAT0031351
• Sequence: 1 - ugacagaagagagugagcac - 20
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR156h-3p

• Accession: MIMAT0031352
• Sequence: 67 - gcucacugcucuaucugucacc - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).