Stem-loop sequence stu-MIR396

Accession

MI0025984 (change log)

Description

Solanum tuberosum miR396 stem-loop

Gene family

MIPF0000047; MIR396

Literature search

4 open access papers mention stu-MIR396
(6 sentences)

Stem-loop

   --                a    cu  -uu   ---   u   g     u    u 
5'   uuccacagcuuucuug acuu  uc   gcu   aaa uuu aucuc aaau g
     |||||||||||||||| ||||  ||   |||   ||| ||| ||||| |||| a
3'   agggugucgaaagaac ugaa  ag   cga   uuu aaa uagag uuua u
   aa                c    --  uau   agu   u   g     u    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138058.1: 516359-516463 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025984

Mature sequence stu-miR396-5p

• Accession: MIMAT0031335
• Sequence: 1 - uuccacagcuuucuugaacuu - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR396-3p

• Accession: MIMAT0031336
• Sequence: 85 - guccaagaaagcugugggaaa - 105
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).