Stem-loop sequence stu-MIR393

AccessionMI0025978 (change log)
DescriptionSolanum tuberosum miR393 stem-loop
Gene family MIPF0000083; MIR393
Literature search

2 open access papers mention stu-MIR393
(12 sentences)

Stem-loop 
   --   a            u         --     aauu 
5'   ucc aagggaucgcau gauccugug  uccca    a
     ||| |||||||||||| |||||||||  |||||    a
3'   agg uucucuagcgua cuaggguau  ggggu    u
   ua   c            -         cu     caau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SolTub3.0; GCA_000226075.1) Overlapping transcripts
JH137943.1: 172773-172848 [+]
intergenic
Database links

Mature sequence stu-miR393-5p

Accession MIMAT0031324
Sequence

1 -  

uccaaagggaucgcauugaucc

 - 22

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Evidence experimental; Illumina [1]

Mature sequence stu-miR393-3p

Accession MIMAT0031325
Sequence

56 -  

aucaugcgaucucuucggaau

 - 76

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).