Stem-loop sequence stu-MIR399o

Accession

MI0025977 (change log)

Description

Solanum tuberosum miR399o stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399o
(12 sentences)

Stem-loop

   --    ua      a     a  -  a   ua 
5'   gggc  cucucu uuggc ug ca uug  u
     ||||  |||||| ||||| || || |||  a
3'   cccg  gagagg aaccg ac gu gac  u
   gu    uc      a     c  a  c   uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1355425-1355488 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399o

• stu-MIR399e: JH137943.1: 1357658-1357721 [+]
• stu-MIR399o: JH137943.1: 1355425-1355488 [-]
• stu-MIR399d: JH137943.1: 1350997-1351060 [+]
• stu-MIR399f: JH137943.1: 1348794-1348857 [-]
• stu-MIR399c: JH137943.1: 1345907-1345970 [+]

Database links

• miRBase Tracker:MI0025977

Mature sequence stu-miR399o-5p

• Accession: MIMAT0031322
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399o-3p

• Accession: MIMAT0031323
• Sequence: 44 - cgccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).