Stem-loop sequence stu-MIR399l

Accession

MI0025974 (change log)

Description

Solanum tuberosum miR399l stem-loop

Gene family

MIPF0000015; MIR399

Literature search

5 open access papers mention stu-MIR399l
(15 sentences)

Stem-loop

   --    ua      a     a  -  u   ua 
5'   gggc  cucucu uuggc ug ca uug  u
     ||||  |||||| ||||| || || |||  a
3'   cccg  gagagg aaccg ac gu gac  u
   gu    uc      a     c  a  c   uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1337176-1337239 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399l

• stu-MIR399c: JH137943.1: 1345907-1345970 [+]
• stu-MIR399m: JH137943.1: 1343553-1343616 [-]
• stu-MIR399l: JH137943.1: 1337176-1337239 [-]
• stu-MIR399n: JH137943.1: 1332990-1333053 [-]
• stu-MIR399b: JH137943.1: 1330373-1330436 [+]

Database links

• miRBase Tracker:MI0025974

Mature sequence stu-miR399l-5p

• Accession: MIMAT0031316
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399l-3p

• Accession: MIMAT0031317
• Sequence: 44 - cgccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).