miRBase entry: stu-MIR172d

Stem-loop stu-MIR172d


Accession
MI0025960
Description
Solanum tuberosum stu-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
10 open access papers mention stu-MIR172d
(50 sentences)

Sequence

GGAGCAUCAUCAAGAUUCACAuagcuauauuagggcuuuuauaauuuuuaaaagcccuaugacgaugugugGGAAUCUUGAUGAUGCUGCAG
(.((((((((((((((((.((((.......(((((((((((.......)))))))))))........)))).)))))))))))))))).)..

Structure
-- G                A    -gcuauau           ua 
  G AGCAUCAUCAAGAUUC CAua        uagggcuuuua  a
  | |||||||||||||||| ||||        |||||||||||  u
  C UCGUAGUAGUUCUAAG gugu        aucccgaaaau  u
GA G                G    guagcagu           uu 


Annotation confidence Not enough data
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Genome context
JH137992.1: 672078-672169 [+]

Database links

Mature stu-miR172d-5p

Accession MIMAT0031292
Description Solanum tuberosum stu-miR172d-5p mature miRNA
Sequence 1 - GGAGCAUCAUCAAGAUUCACA - 21
Evidence experimental
Illumina [1]

Mature stu-miR172d-3p

Accession MIMAT0031293
Description Solanum tuberosum stu-miR172d-3p mature miRNA
Sequence 72 - GGAAUCUUGAUGAUGCUGCAG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233