Stem-loop sequence stu-MIR172d

Accession

MI0025960 (change log)

Description

Solanum tuberosum miR172d stem-loop

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172d
(50 sentences)

Stem-loop

   -- g                --     gcuauau           ua 
5'   g agcaucaucaagauuc  acaua       uagggcuuuua  a
     | ||||||||||||||||  |||||       |||||||||||  u
3'   c ucguaguaguucuaag  ugugu       aucccgaaaau  u
   ga g                gg     -agcagu           uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137992.1: 672078-672169 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025960

Mature sequence stu-miR172d-5p

• Accession: MIMAT0031292
• Sequence: 1 - ggagcaucaucaagauucaca - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR172d-3p

• Accession: MIMAT0031293
• Sequence: 72 - ggaaucuugaugaugcugcag - 92
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).