Stem-loop sequence stu-MIR172a

Accession

MI0025959 (change log)

Description

Solanum tuberosum miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

12 open access papers mention stu-MIR172a
(52 sentences)

Stem-loop

   --       a          a      aag  g     ---uu     a     g 
5'   guagcau aucaagauuc caugaa   uu caaau     guuau uaauu a
     ||||||| |||||||||| ||||||   || |||||     ||||| ||||| u
3'   cgucgua uaguucuaag guacuu   aa guuua     cggua auuaa g
   ua       g          a      --a  -     ucgau     -     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137880.1: 29806-29909 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025959

Mature sequence stu-miR172a-5p

• Accession: MIMAT0031290
• Sequence: 1 - guagcauaaucaagauucaca - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR172a-3p

• Accession: MIMAT0031291
• Sequence: 84 - agaaucuugaugaugcugcau - 104
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).