Stem-loop sequence stu-MIR827

Accession

MI0025949 (change log)

Description

Solanum tuberosum miR827 stem-loop

Gene family

MIPF0001769; MIR827_5

Literature search

2 open access papers mention stu-MIR827
(4 sentences)

Stem-loop

   --          g       u   ucauaucauu       guuuu  c 
5'   uuuguugaug ucaucua uca          uggcaua     ug a
     |||||||||| ||||||| |||          |||||||     ||  
3'   aaacaacuac aguagau agu          accguau     ac a
   ac          a       u   ----------       -aauu  c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137826.1: 454124-454210 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025949

Mature sequence stu-miR827-5p

• Accession: MIMAT0031272
• Sequence: 1 - uuuguugauggucaucuauuc - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR827-3p

• Accession: MIMAT0031273
• Sequence: 67 - uuagaugaacaucaacaaaca - 87
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).