miRBase entry: stu-MIR827

Stem-loop stu-MIR827


Accession
MI0025949
Description
Solanum tuberosum stu-MIR827 precursor miRNA
Gene family
MIPF0001769; MIR827_5

Literature search
2 open access papers mention stu-MIR827
(4 sentences)

Sequence

UUUGUUGAUGGUCAUCUAUUCaucauaucauuuggcauaguuuuugcaaccauuaauaugccaugaUUAGAUGAACAUCAACAAACA
((((((((((.(((((((.(((..........(((((((.((..((....))..)))))))))))).))))))).))))))))))..

Structure
--          G       U   ucauaucauu       g  uu  c 
  UUUGUUGAUG UCAUCUA UCa          uggcaua uu  ug a
  |||||||||| ||||||| |||          ||||||| ||  ||  
  AAACAACUAC AGUAGAU agu          accguau aa  ac a
AC          A       U   ----------       -  uu  c 


Annotation confidence Not enough data
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Genome context
JH137826.1: 454124-454210 [-]

Database links

Mature stu-miR827-5p

Accession MIMAT0031272
Description Solanum tuberosum stu-miR827-5p mature miRNA
Sequence 1 - UUUGUUGAUGGUCAUCUAUUC - 21
Evidence experimental
Illumina [1]

Mature stu-miR827-3p

Accession MIMAT0031273
Description Solanum tuberosum stu-miR827-3p mature miRNA
Sequence 67 - UUAGAUGAACAUCAACAAACA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233