miRBase entry: stu-MIR395g

Stem-loop stu-MIR395g


Accession
MI0025945
Description
Solanum tuberosum stu-MIR395g precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention stu-MIR395g
(4 sentences)

Sequence

guucccuugaccacuucaucaugagggguugauaucuucuuuuuugaugucuugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((...(((((.(((((...........))))).))))).))))))).))))))))))..

Structure
--          c       uca     g     uauc 
  guucccuuga cacuuca   ugagg guuga    u
  |||||||||| |||||||   ||||| |||||    u
  CAAGGGGGUU GUGAAGU   guucu uaguu    c
CU          U       --C     g     uuuu 


Annotation confidence Not enough data
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Genome context
JH138865.1: 20451-20525 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR395g

Accession MIMAT0031268
Description Solanum tuberosum stu-miR395g mature miRNA
Sequence 55 - CUGAAGUGUUUGGGGGAACUC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233