miRBase entry: stu-MIR395f

Stem-loop stu-MIR395f


Accession
MI0025944
Description
Solanum tuberosum stu-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
3 open access papers mention stu-MIR395f
(4 sentences)

Sequence

guucccuugaccacuucaugagggcuuacuucguuguuugaagcccuaCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..(((((((((......))...)))))))..))))))).))))))))))..

Structure
--          c       ug       ---  uu 
  guucccuuga cacuuca  agggcuu   ac  c
  |||||||||| |||||||  |||||||   ||   
  CAAGGGGGUU GUGAAGU  ucccgaa   ug  g
CU          U       Ca       guu  uu 


Annotation confidence Not enough data
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Genome context
JH138865.1: 14956-15024 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR395f

Accession MIMAT0031267
Description Solanum tuberosum stu-miR395f mature miRNA
Sequence 49 - CUGAAGUGUUUGGGGGAACUC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233