miRBase entry: stu-MIR395a

Stem-loop stu-MIR395a


Accession
MI0025939
Description
Solanum tuberosum stu-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention stu-MIR395a
(9 sentences)

Sequence

guucccuugaccacuucaugagggauuaauuucuucauuuuuguugcccugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..((((..((((............))))))))..))))))).))))))))))..

Structure
--          c       ug    au    uucuu 
  guucccuuga cacuuca  aggg  uaau     c
  |||||||||| |||||||  ||||  ||||      
  CAAGGGGGUU GUGAAGU  uccc  guug     a
CU          U       Cg    --    uuuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH137931.1: 851903-851974 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from stu-MIR395a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR395a

Accession MIMAT0031262
Description Solanum tuberosum stu-miR395a mature miRNA
Sequence 52 - CUGAAGUGUUUGGGGGAACUC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233