Stem-loop sequence stu-MIR171c

Accession

MI0025937 (change log)

Description

Solanum tuberosum miR171c stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention stu-MIR171c
(31 sentences)

Stem-loop

   --       c       c     -  caca 
5'   uauuggc ugguuca ucaga ca    c
     ||||||| ||||||| ||||| ||     
3'   auaacug gccgagu aguuu gu    u
   cu       u       u     c  uuua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138511.1: 106309-106367 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025937

Mature sequence stu-miR171c-5p

• Accession: MIMAT0031258
• Sequence: 1 - uauuggccugguucacucaga - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR171c-3p

• Accession: MIMAT0031259
• Sequence: 39 - ugauugagccgugucaauauc - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).