Stem-loop sequence stu-MIR166c

Accession

MI0025934 (change log)

Description

Solanum tuberosum miR166c stem-loop

Gene family

MIPF0000004; MIR166

Literature search

7 open access papers mention stu-MIR166c
(29 sentences)

Stem-loop

   --      uu      cu   g c   c   uucaucuaau 
5'   ggaaug  guuugg  cga g cac aac          g
     ||||||  ||||||  ||| | ||| |||          u
3'   ccuuac  cggacc  gcu c gug uug          a
   cc      uu      ag   g u   a   uucucaacga 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137934.1: 464574-464656 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025934

Mature sequence stu-miR166c-5p

• Accession: MIMAT0031252
• Sequence: 1 - ggaauguuguuuggcucgagg - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR166c-3p

• Accession: MIMAT0031253
• Sequence: 63 - ucggaccaggcuucauucccc - 83
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).