Stem-loop sequence stu-MIR166a

Accession

MI0025932 (change log)

Description

Solanum tuberosum miR166a stem-loop

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention stu-MIR166a
(16 sentences)

Stem-loop

   --      uu      cu   g  -a     uucuu     cuca          ua 
5'   ggaaug  gucugg  cga ga  ucaaa     uauua    uagaucugua  u
     ||||||  ||||||  ||| ||  |||||     |||||    ||||||||||  u
3'   ccuuac  cggacc  gcu cu  aguuu     guaau    aucuagauau  g
   cc      uu      ag   g  gc     ---uu     ----          uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137800.1: 3902789-3902895 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025932

Mature sequence stu-miR166a-5p

• Accession: MIMAT0031249
• Sequence: 1 - ggaauguugucuggcucgagg - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR166a-3p

• Accession: MIMAT0031250
• Sequence: 87 - ucggaccaggcuucauucccc - 107
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).