Stem-loop stu-MIR166a

Accession

MI0025932

Description

Solanum tuberosum stu-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention stu-MIR166a
(16 sentences)

Sequence

GGAAUGUUGUCUGGCUCGAGGaaucaaauucuuuauuacucauagaucuguauauuguuuauagaucuauaauguuuuugacgucgUCGGACCAGGCUUCAUUCCCC
((((((..((((((.((((.((.(((((..(.(((.......((((((((((.......))))))))))))).)..)))))..)).)))).))))))..))))))..

Structure

--      UU      C    G  -a     uu u   uuacuca          ua 
  GGAAUG  GUCUGG UCGA Ga  ucaaa  c uua       uagaucugua  u
  ||||||  |||||| |||| ||  |||||  | |||       ||||||||||  u
  CCUUAC  CGGACC GGCU cu  aguuu  g aau       aucuagauau  g
CC      UU      A    g  gc     uu u   -------          uu 

Annotation confidence Not enough data

Genome context

JH137800.1: 3902789-3902895 [+]

Mature stu-miR166a-5p

• Accession: MIMAT0031249
• Description: Solanum tuberosum stu-miR166a-5p mature miRNA
• Sequence: 1 - GGAAUGUUGUCUGGCUCGAGG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR166a-3p

• Accession: MIMAT0031250
• Description: Solanum tuberosum stu-miR166a-3p mature miRNA
• Sequence: 87 - UCGGACCAGGCUUCAUUCCCC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233