miRBase entry: stu-MIR8050

Stem-loop stu-MIR8050


Accession
MI0025885
Description
Solanum tuberosum stu-MIR8050 precursor miRNA


Sequence

AAGUAGGAAUCAAGGUCAAUgacaugacacgaaggcaggcaggacaccuuuucuacuuuuguuuugucaaguguuaugucauUGACUUGAGAUUCCUACUUGG
(((((((((((.((((((((((((((((((...(((((((((((............))))).))))))..))))))))))))))))))..)))))))))))..

Structure
--           -A                  gaa      -     caccu 
  AAGUAGGAAUC  AGGUCAAUgacaugacac   ggcagg cagga     u
  |||||||||||  ||||||||||||||||||   |||||| |||||      
  UUCAUCCUUAG  UUCAGUuacuguauugug   cuguuu guuuu     u
GG           AG                  -aa      u     caucu 


Annotation confidence Not enough data
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Genome context
JH137810.1: 2620941-2621043 [-]

Database links

Mature stu-miR8050-5p

Accession MIMAT0031238
Description Solanum tuberosum stu-miR8050-5p mature miRNA
Sequence 1 - AAGUAGGAAUCAAGGUCAAU - 20
Evidence experimental
Illumina [1]

Mature stu-miR8050-3p

Accession MIMAT0030976
Description Solanum tuberosum stu-miR8050-3p mature miRNA
Sequence 83 - UGACUUGAGAUUCCUACUUGG - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233