Stem-loop sequence stu-MIR399g

Accession

MI0025879 (change log)

Description

Solanum tuberosum miR399g stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399g
(12 sentences)

Stem-loop

   --    ua      a     a  -     ----  u 
5'   gggc  cucucu uuggc ug caguu    ug c
     ||||  |||||| ||||| || |||||    || a
3'   cccg  gagggg aaccg ac gucga    ac c
   au    uc      a     c  a     cuuu  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1312547-1312614 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399g

• stu-MIR399a: JH137943.1: 1321860-1321923 [+]
• stu-MIR399g: JH137943.1: 1312547-1312614 [-]

Database links

• miRBase Tracker:MI0025879

Mature sequence stu-miR399g-5p

• Accession: MIMAT0030970
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399g-3p

• Accession: MIMAT0031233
• Sequence: 48 - cgccaaaggggagcugcccua - 68
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).