Stem-loop sequence stu-MIR399a

Accession

MI0025873 (change log)

Description

Solanum tuberosum miR399a stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399a
(14 sentences)

Stem-loop

   --    ua      a        -    gauc 
5'   gggc  cucucu uuggcaug cagu    u
     ||||  |||||| |||||||| ||||    a
3'   cccg  gagagg aaccguac gucg    u
   gu    uc      a        a    aauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1321860-1321923 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399a

• stu-MIR399g: JH137943.1: 1312547-1312614 [-]
• stu-MIR399a: JH137943.1: 1321860-1321923 [+]
• stu-MIR399k: JH137943.1: 1326953-1327016 [-]
• stu-MIR399b: JH137943.1: 1330373-1330436 [+]

Database links

• miRBase Tracker:MI0025873

Mature sequence stu-miR399a-5p

• Accession: MIMAT0030964
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399a-3p

• Accession: MIMAT0031227
• Sequence: 44 - ugccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).