Stem-loop sequence stu-MIR319

Accession

MI0025861 (change log)

Description

Solanum tuberosum miR319 stem-loop

Gene family

MIPF0000010; MIR159

Literature search

5 open access papers mention stu-MIR319
(10 sentences)

Stem-loop

   --   a    g          ccc    ug guuauu        u   u   g   a        cu  u         aaagaa    a 
5'   agg aacu uuuaguccaa   aagg  g      ggaacuga cuu gcu cug aucauugg  ca gagcauguc      gaug a
     ||| |||| ||||||||||   ||||  |      |||||||| ||| ||| ||| ||||||||  || |||||||||      |||| u
3'   ucc uugg aagucagguu   uucc  c      uuuuggcu gag cga gac uaguaacc  gu cuuguacag      cuac a
   cu   c    g          cuu    gu ---acu        c   u   g   g        uc  u         ---guc    a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137816.1: 1868464-1868640 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025861

Mature sequence stu-miR319-5p

• Accession: MIMAT0031219
• Sequence: 1 - aggaaacuguuuaguccaacc - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR319-3p

• Accession: MIMAT0030952
• Sequence: 157 - uuggacugaaggguucccuuc - 177
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).