miRBase entry: stu-MIR319

Stem-loop stu-MIR319


Accession
MI0025861
Description
Solanum tuberosum stu-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
5 open access papers mention stu-MIR319
(10 sentences)

Sequence

AGGAAACUGUUUAGUCCAACCcaagguggguuauuggaacugaucuuugcugcugaaucauuggcucaugagcaugucaaagaagaugaauaacauccuggacauguucuugcuccaaugaugcaggagcugagcucgguuuuucacugccuuuucUUGGACUGAAGGGUUCCCUUC
(((.((((.((((((((((...(((((((......((((((((.(((.(((.(((.((((((((..((.(((((((((..((..((((.....)))))).))))))))).))..)))))))).))).))).))).))))))))...)))))))...)))))))))).)))).)))..

Structure
--   A    G          CCc       guuauu        u   u   g   a        cu  u         aa  aa    a 
  AGG AACU UUUAGUCCAA   aaggugg      ggaacuga cuu gcu cug aucauugg  ca gagcauguc  ag  gaug a
  ||| |||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||  |||| u
  UCC UUGG AAGUCAGGUU   uuccguc      uuuuggcu gag cga gac uaguaacc  gu cuuguacag  uc  cuac a
CU   C    G          cuu       ---acu        c   u   g   g        uc  u         -g  --    a 


Annotation confidence Not enough data
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Genome context
JH137816.1: 1868464-1868640 [+]

Database links

Mature stu-miR319-5p

Accession MIMAT0031219
Description Solanum tuberosum stu-miR319-5p mature miRNA
Sequence 1 - AGGAAACUGUUUAGUCCAACC - 21
Evidence experimental
Illumina [1]

Mature stu-miR319-3p

Accession MIMAT0030952
Description Solanum tuberosum stu-miR319-3p mature miRNA
Sequence 157 - UUGGACUGAAGGGUUCCCUUC - 177
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233