miRBase entry: stu-MIR8038b

Stem-loop stu-MIR8038b


Accession
MI0025858
Description
Solanum tuberosum stu-MIR8038b precursor miRNA
Gene family
MIPF0001737; MIR8038

Literature search
2 open access papers mention stu-MIR8038b
(3 sentences)

Sequence

CCUUGUGAGUAAGUUGAAUCUCaugcuuguuaaacuucaacacguguugcagaaugcgucccaacuuaacaagcaugaGUUCAACUUGCUCACUUGGAG
((..((((((((((((((.((((((((((((((........(((((((....)))))))......))))))))))))))))))))))))))))..))..

Structure
--  UU              U              acuucaac       g 
  CC  GUGAGUAAGUUGAA CUCaugcuuguuaa        acguguu c
  ||  |||||||||||||| ||||||||||||||        |||||||  
  GG  CACUCGUUCAACUU Gaguacgaacaauu        ugcguaa a
GA  UU              -              --caaccc       g 


Annotation confidence Not enough data
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Genome context
JH138279.1: 46700-46798 [+]

Database links

Mature stu-miR8038b-5p

Accession MIMAT0030949
Description Solanum tuberosum stu-miR8038b-5p mature miRNA
Sequence 1 - CCUUGUGAGUAAGUUGAAUCUC - 22
Evidence experimental
Illumina [1]

Mature stu-miR8038b-3p

Accession MIMAT0031217
Description Solanum tuberosum stu-miR8038b-3p mature miRNA
Sequence 79 - GUUCAACUUGCUCACUUGGAG - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233