miRBase entry: stu-MIR8021

Stem-loop stu-MIR8021


Accession
MI0025829
Description
Solanum tuberosum stu-MIR8021 precursor miRNA


Sequence

AUUCAAGGCUCAAACUCGAGACCUcugguuaagauagauggaucauauauaucccaccacaacuuuuguugguacuaauaaugacuuaauuuacuuucucuuaaaaauuaggcaauauguuggauuuauuuguuguguucuacccacaaagauuugguugaguggaaguuaguauuuauuuauccuuaaccagaagugucaaguucgagucuuggacau
.((((((((((.((((.((.((.((((((((((((((((((((..((..(...((((..((((((((((.((((((((((.((.((((((((............))))))))))...)))))).................)))).))))).....))))).)))).)..))..)))))))))).)))))))))).)).)).)))).))))))))))...

Structure
--A          A    C  G  C          -          ca  ua auc    ca     -----     u    -----------------      --a  a        acuuu 
   UUCAAGGCUC AACU GA AC Ucugguuaag auagauggau  ua  u   ccac  caacu     uuugu ggua                 cuaaua   ug cuuaauuu     c
   |||||||||| |||| || || |||||||||| ||||||||||  ||  |   ||||  |||||     ||||| ||||                 ||||||   || ||||||||      
   agguucugag uuga cu ug agaccaauuc uauuuauuua  au  a   ggug  guugg     aaaca ccau                 gguugu   ac ggauuaaa     u
uac          c    a  g  a          c          ug  ug --a    -a     uuuag     c    cuuguguuguuuauuua      aua  -        aauuc 


Annotation confidence Not enough data
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Genome context
JH138088.1: 345340-345558 [-]

Database links

Mature stu-miR8021

Accession MIMAT0030920
Description Solanum tuberosum stu-miR8021 mature miRNA
Sequence 1 - AUUCAAGGCUCAAACUCGAGACCU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233