miRBase entry: stu-MIR8007a

Stem-loop stu-MIR8007a


Accession
MI0025808
Description
Solanum tuberosum stu-MIR8007a precursor miRNA
Gene family
MIPF0001839; MIR8007

Literature search
3 open access papers mention stu-MIR8007a
(4 sentences)

Sequence

AUGUGGCACUUUUCGGAUUUUGAGauuuaaacaagucuaacuuugacuguaaauuuuucauagaucuuuuaaacauuuugaauuaucaauauuugugaauuauaguacuuuuuacguaguuuacaaauauacaaauuuuauuucaaaaaaaauugaucauuucaugcguaaauuucuagccaaacuuaaacuguuugacucuCGAAAAAUGAAAAGUGCCACAUAA
(((((((((((((((..((((((((.(((((((.((.(((.((((.(((.((((((..(((((((..((......(((((((.((...(((((((((((((((.(((.....))))))))))))))))))........)).)))))))......))..)))).)))...)))))).))).)))).))).))))))))).))))))))..)))))))))))))))..

Structure
--               GA        u       a  c   c    a   u      -uu   -    cu  uaaaca       u  -----uca               a   c 
  AUGUGGCACUUUUCG  UUUUGAGa uuaaaca gu uaa uuug cug aaauuu   cau agau  uu      uuuugaa ua        auauuugugaauuau gua u
  |||||||||||||||  |||||||| ||||||| || ||| |||| ||| ||||||   ||| ||||  ||      ||||||| ||        ||||||||||||||| ||| u
  UACACCGUGAAAAGU  AAAGCucu aguuugu ca auu aaac gau uuuaaa   gua uuua  ag      aaaacuu au        uauaaacauuugaug cau u
AA               AA        c       -  a   c    c   c      ugc   c    cu  uuaaaa       u  uuuaaaca               -   u 


Annotation confidence Not enough data
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Genome context
JH137932.1: 818593-818818 [+]

Database links

Mature stu-miR8007a-5p

Accession MIMAT0030899
Description Solanum tuberosum stu-miR8007a-5p mature miRNA
Sequence 1 - AUGUGGCACUUUUCGGAUUUUGAG - 24
Evidence experimental
Illumina [1]

Mature stu-miR8007a-3p

Accession MIMAT0031193
Description Solanum tuberosum stu-miR8007a-3p mature miRNA
Sequence 203 - CGAAAAAUGAAAAGUGCCACAUAA - 226
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233