Stem-loop sequence stu-MIR8007a

Accession

MI0025808 (change log)

Description

Solanum tuberosum miR8007a stem-loop

Gene family

MIPF0001839; MIR8007

Literature search

3 open access papers mention stu-MIR8007a
(4 sentences)

Stem-loop

   --               ga        u       a  c   c    a   u      -uu   a  -ucuu    -aca       u  -----uca               a   c 
5'   auguggcacuuuucg  uuuugaga uuaaaca gu uaa uuug cug aaauuu   cau ga     uuaa    uuuugaa ua        auauuugugaauuau gua u
     |||||||||||||||  |||||||| ||||||| || ||| |||| ||| ||||||   ||| ||     ||||    ||||||| ||        ||||||||||||||| ||| u
3'   uacaccgugaaaagu  aaagcucu aguuugu ca auu aaac gau uuuaaa   gua cu     aguu    aaaacuu au        uauaaacauuugaug cau u
   aa               aa        c       -  a   c    c   c      ugc   -  uuacu    aaaa       u  uuuaaaca               -   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137932.1: 818593-818818 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025808

Mature sequence stu-miR8007a-5p

• Accession: MIMAT0030899
• Sequence: 1 - auguggcacuuuucggauuuugag - 24
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR8007a-3p

• Accession: MIMAT0031193
• Sequence: 203 - cgaaaaaugaaaagugccacauaa - 226
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).