Stem-loop sequence stu-MIR7992

Accession

MI0025777 (change log)

Description

Solanum tuberosum miR7992 stem-loop

Literature search

2 open access papers mention stu-MIR7992
(7 sentences)

Stem-loop

   --     c                  -   c                  a       c aaa    a  au 
5'   uuuga aaugcacaucuagacacu uaa uugguuuaaguuggccuc uaaacac c   uuug ga  g
     ||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||| |   |||| ||  c
3'   aaacu uuacguguagaucugugg auu aaccaaauucaaccgggg auuugug g   agac cu  a
   ug     -                  u   a                  c       u aaa    -  ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137824.1: 720823-720962 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025777

Mature sequence stu-miR7992-5p

• Accession: MIMAT0030868
• Sequence: 1 - uuugacaaugcacaucuagacacu - 24
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR7992-3p

• Accession: MIMAT0031186
• Sequence: 118 - ugucuagaugugcauuucaaagu - 140
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).