Stem-loop sequence stu-MIR7984b

Accession

MI0025762 (change log)

Description

Solanum tuberosum miR7984b stem-loop

Gene family

MIPF0001671; MIR7984

Literature search

1 open access papers mention stu-MIR7984b
(1 sentences)

Stem-loop

   --        c    -    u                             -                  g   c  g        cauaaaaauugcau 
5'   auaccgaa uuug gaaa gaccuuuuaccccugcacuauuuaauagu uauuuuaaagguauauau ugc ca guggacau              c
     |||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||               
3'   uaugguuu aaau cuuu cuggaaaauggggaugugauaaauuauca auaaaauuuccauauaua acg gu caucugug              a
   gc        a    a    -                             c                  a   a  g        caaugauaaauauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH138511.1: 123046-123240 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025762

Mature sequence stu-miR7984b-5p

• Accession: MIMAT0030853
• Sequence: 1 - auaccgaacuuuggaaaugaccuu - 24
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR7984b-3p

• Accession: MIMAT0031184
• Sequence: 172 - ggucuuucauaaaauuugguaucg - 195
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).