Stem-loop prd-mir-7940a

Accession

MI0025690

Description

Panagrellus redivivus prd-mir-7940a precursor miRNA

Gene family

MIPF0001719; mir-7940

Sequence

UGGAAGAUGCGUCUUCGUUCAUUugcauuuguuaaUCACGCGGAUUGCAUCUUUCAA
((((((((((((((.(((..(((.((....)).))).))).))).))))))))))).

Structure

-           -   U   UC   u  a 
 UGGAAGAUGCG UCU CGU  AUU gc u
 ||||||||||| ||| |||  ||| ||  
 ACUUUCUACGU AGG GCA  Uaa ug u
A           U   C   -C   u  u 

Annotation confidence Not enough data

Genome context

KB455127.1: 278241-278297 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7940a

Mature prd-miR-7940a-5p

• Accession: MIMAT0030738
• Description: Panagrellus redivivus prd-miR-7940a-5p mature miRNA
• Sequence: 1 - UGGAAGAUGCGUCUUCGUUCAUU - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7940a-3p

• Accession: MIMAT0030739
• Description: Panagrellus redivivus prd-miR-7940a-3p mature miRNA
• Sequence: 36 - UCACGCGGAUUGCAUCUUUCAA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295