Stem-loop sequence bta-mir-2284ab

Accession

MI0025532 (change log)

Description

Bos taurus miR-2284ab stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284ab
(32 sentences)

Stem-loop

   --ua        g ug           aac 
5'     aaaguuug u  gguuuuucugu   a
       |||||||| |  |||||||||||    
3'     uuucaaac a  cuaaaaaggua   u
   ggcc        a gu           guc 

Deep sequencing

1518 reads, 5.71 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr6: 104213873-104213932 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000024607 ; AFF1-201; intron 10

Database links

• RNAcentral:URS000075C17F_9913
• miRBase Tracker:MI0025532

Mature sequence bta-miR-2284ab

• Accession: MIMAT0030437
• Sequence: 1 - uaaaaguuugguuggguuuuu - 21
• Deep sequencing: 1435 reads, 70 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284ab

References

1. PMID:23472090 "Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection" Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ PLoS One. 8:e57543(2013).