miRBase entry: bta-mir-7857-1

Stem-loop bta-mir-7857-1


Accession
MI0025527
Description
Bos taurus bta-mir-7857-1 precursor miRNA
Gene family
MIPF0002001; mir-7857

Literature search
1 open access papers mention bta-mir-7857-1
(1 sentences)

Sequence

263 reads, 25 reads per million, 49 experiments
AUAGCCAGUUGGGGAAGAAUGCccgugucuuaaagugagaagguuuguucuccaaccuggcucuuu
..((((((((((((((.((.(((....(((((...))))).))))).)))))))).))))))....

Structure
--AU      -        G  U   cgug     a 
    AGCCAG UUGGGGAA AA GCc    ucuua  
    |||||| |||||||| || |||    ||||| a
    ucgguc aaccucuu uu ugg    agagu  
uuuc      c        g  -   ---a     g 


Annotation confidence Not enough data
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Genome context
chr23: 30973815-30973880 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-7857-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-7857-5p

Accession MIMAT0030432
Description Bos taurus bta-miR-7857-5p mature miRNA
Sequence 1 - AUAGCCAGUUGGGGAAGAAUGC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23472090
    Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection
    Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ
    PLoS One (2013) 8:e57543