miRBase entry: ptc-MIR7827

Stem-loop ptc-MIR7827


Accession
MI0025503
Description
Populus trichocarpa ptc-MIR7827 precursor miRNA


Sequence

aguggaaugauuuGCUAGGACCAAGUUUUUUGGAaaauguuaagauuaauuaaucuuaacauuuuccagaaaacuugguccuagcaaaauagcuuac
.((((..((.(((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))))).))..))))

Structure
a    aa  a                                     a 
 gugg  ug uuuGCUAGGACCAAGUUUUUUGGAaaauguuaagauu a
 ||||  || |||||||||||||||||||||||||||||||||||||  
 cauu  au aaacgauccugguucaaaagaccuuuuacaauucuaa u
-    cg  a                                     u 


Annotation confidence Not enough data
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Genome context
CM000349.2: 9970810-9970906 [+]

Database links

Mature ptc-miR7827

Accession MIMAT0030403
Description Populus trichocarpa ptc-miR7827 mature miRNA
Sequence 14 - GCUAGGACCAAGUUUUUUGGA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233