Stem-loop ptc-MIR7819

Accession

MI0025501

Description

Populus trichocarpa ptc-MIR7819 precursor miRNA

Sequence

ccucucauguUCUUGAGAACAUGAUGAAUCGuguuuaaauucaaaucaauaauuauauuuuagcuuaaauucaaguaccuugcuaauuauauaucugaaaacuauguaaaaaaucaaguuuaaacaugauucaucauguucucaagaauuugagagu
.((((((.(((((((((((((((((((((((((((((((((..................(((((.................)))))(((((((.........))))))).......))))))))))))))))))))))))))))))))).)))))).

Structure

c      u                                 caaaucaauaauuauauuuuagcuuaaauucaaguaccuugcuaa       ucu 
 cucuca guUCUUGAGAACAUGAUGAAUCGuguuuaaauu                                             uuauaua   g
 |||||| |||||||||||||||||||||||||||||||||                                             |||||||   a
 gagagu uaagaacucuuguacuacuuaguacaaauuuga                                             aauguau   a
u      u                                 --------------------------------------acuaaaa       caa 

Annotation confidence Not enough data

Genome context

CM000347.2: 4410758-4410914 [+]

Mature ptc-miR7819

• Accession: MIMAT0030401
• Description: Populus trichocarpa ptc-miR7819 mature miRNA
• Sequence: 11 - UCUUGAGAACAUGAUGAAUCG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233