miRBase entry: ptc-MIR7813

Stem-loop ptc-MIR7813


Accession
MI0025500
Description
Populus trichocarpa ptc-MIR7813 precursor miRNA


Sequence

caagguuaccagcaacacuugcauuaccaaaacagcuucuucaacguuugaaguucuuuaaaguaccaaugcacucuggcaacucucuaaugcuuggacagucuccgauuauaaaucuuguaaggaguuuguagauccuugaagaaguuacuuUGGUAAUGCAAGUGUUGCUAAccuca
..(((((...(((((((((((((((((((((..((((((((((((.((((((....)))))))).((((.(((...(((.......))).)))))))((((.((((..((((((...)))))))))).)))).......))))))))))..))))))))))))))))))))))))))..

Structure
ca     acc                     ac          acguuugaaguucuuuaaaguaccaaugcacucuggcaacucucuaaugcuugg    u    ga      a 
  agguu   agcaacacuugcauuaccaaa  agcuucuuca                                                      acag cucc  uuauaa  
  |||||   |||||||||||||||||||||  ||||||||||                                                      |||| ||||  |||||| u
  uccAA   UCGUUGUGAACGUAAUGGUuu  uugaagaagu                                                      uguu gagg  aauguu  
ac     ---                     ca          -----------------------------------------------uccuaga    u    --      c 


Annotation confidence Not enough data
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Genome context
CM000347.2: 1025164-1025342 [+]

Database links

Mature ptc-miR7813

Accession MIMAT0030400
Description Populus trichocarpa ptc-miR7813 mature miRNA
Sequence 154 - UGGUAAUGCAAGUGUUGCUAA - 174
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233