miRBase entry: ptc-MIR7841

Stem-loop ptc-MIR7841


Accession
MI0025498
Description
Populus trichocarpa ptc-MIR7841 precursor miRNA


Sequence

aagcuccauccauaagguuuuauguuugacagaaacccccucauguuuucaacccuaccgagguuuuuugucaagguuucugucaaauuuauauaguacaggguaggaaacaugaGGGGGUUGCUGUCAAGCAUAAaagcauuuggaugaugcuug
((((..((((((...(.(((((((((((((((.(((((((((((((((((.(((((((........((((.((.......)).))))........))..))))).))))))))))))))))).))))))))))))))).)...))))))..)))).

Structure
-    uc      uaa g               a                 a     --  cgagguuu    u  ag 
 aagc  caucca   g uuuuauguuugacag aacccccucauguuuuc acccu  ac        uuug ca  g
 ||||  ||||||   | ||||||||||||||| ||||||||||||||||| |||||  ||        |||| ||  u
 uucg  guaggu   c aaAAUACGAACUGUC UUGGGGGaguacaaagg uggga  ug        aaac gu  u
g    ua      uua g               G                 a     ca  auauauuu    u  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR7841

Accession MIMAT0030398
Description Populus trichocarpa ptc-miR7841 mature miRNA
Sequence 116 - GGGGGUUGCUGUCAAGCAUAA - 136
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233