Stem-loop sequence ptc-MIR6459b

AccessionMI0025496 (change log)
DescriptionPopulus trichocarpa miR6459b stem-loop
Gene family MIPF0001730; MIR6459
Literature search

1 open access papers mention ptc-MIR6459b
(1 sentences)

Stem-loop 
   a     acaau       c            ga   u  c    
5'  agaag     cucaagc caaauucgaucu  cuu gc ggu 
    |||||     ||||||| ||||||||||||  ||| || || a
3'  ucuuc     gaguucg guuuaagcuaga  gaa ug ucc 
   a     agcuc       u            ac   u  u
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000339.2: 9383296-9383382 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR6459b
ptc-MIR6459bCM000339.2: 9383296-9383382 [-]
ptc-MIR6459aCM000339.2: 9383289-9383389 [+]
Database links

Mature sequence ptc-miR6459b

Accession MIMAT0030396
Sequence

11 -  

ucucaagcccaaauucgauc

 - 30

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).