miRBase entry: ptc-MIR6459b

Stem-loop ptc-MIR6459b


Accession
MI0025496
Description
Populus trichocarpa ptc-MIR6459b precursor miRNA
Gene family
MIPF0001730; MIR6459

Literature search
1 open access papers mention ptc-MIR6459b
(1 sentences)

Sequence

aagaagacaaUCUCAAGCCCAAAUUCGAUCugacuuugccgguaccuuguuaagcaagaucgaauuugugcuugagcucgacuucua
.(((((.....(((((((.((((((((((((..(((.((.((...)).)).)))..)))))))))))).))))))).....))))).

Structure
a     acaaU       C            ga   u  c  u 
 agaag     CUCAAGC CAAAUUCGAUCu  cuu gc gg  
 |||||     ||||||| ||||||||||||  ||| || || a
 ucuuc     gaguucg guuuaagcuaga  gaa ug uc  
a     agcuc       u            ac   u  u  c 


Annotation confidence Not enough data
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Genome context
CM000339.2: 9383296-9383382 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR6459b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6459b

Accession MIMAT0030396
Description Populus trichocarpa ptc-miR6459b mature miRNA
Sequence 11 - UCUCAAGCCCAAAUUCGAUC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233