Stem-loop ptc-MIR7837

Accession

MI0025493

Description

Populus trichocarpa ptc-MIR7837 precursor miRNA

Gene family

MIPF0001800; MIR7836

Sequence

uggaacuguuUGGGUGGGAGGUGUGGUAGCUuuuuuuuaagguaccacccucuuaaagcacacaccacacuuucuaaaagcaaaaaauacaugcuuuuuaguaagaggugugguagcuuuuugaaaaagaaaacaaccacaccucucacccaaacacccucga
.((...(((((((((((((((((((((.(.(((((((((((.(((((((((((((..................(((((((((.........))).))))))))))))).)))))).))).....)))))))).).))))))))))))))))))))).))....

Structure

---u  aac                     A C        -----   g      -       aagcacacaccacacuuu      -   aaa 
    gg   uguuUGGGUGGGAGGUGUGGU G Uuuuuuuu     aag uaccac ccucuua                  cuaaaa gca   a
    ||   ||||||||||||||||||||| | ||||||||     ||| |||||| |||||||                  |||||| |||   a
    cc   acaaacccacucuccacacca c aaagaaaa     uuc auggug ggagaau                  gauuuu cgu   u
agcu  --c                     a a        aguuu   g      u       ------------------      u   aca 

Annotation confidence Not enough data

Genome context

CM000344.2: 18609503-18609665 [+]

Mature ptc-miR7837

• Accession: MIMAT0030393
• Description: Populus trichocarpa ptc-miR7837 mature miRNA
• Sequence: 11 - UGGGUGGGAGGUGUGGUAGCU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233